MSSMBS'06

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International Workshop MSSMBS 2006: Preliminary Program

September 18

Arrival and Registration in "Dubna" hotel

September 19

• 09³⁰-10⁰⁰ Opening ceremony.
• 10⁰⁰-10⁴⁵ Alexander Nemukhin "Modeling properties of biomolecules by quantum mechanical √ molecular mechanical (QM/MM) methods"
  Department of Chemistry, M.V.Lomonosov Moscow State University, Leninskie Gory 1/3, Moscow, 119992 Russia
• 10⁴⁵-11³⁰ Tatyana Feldman "Visual pigment rhodopsin: a computer simulation of the molecular dynamics of 11-cis-retinal chromophore and amino-acid residues in the chromophore centre"
  Biochemical Physics Institute, Russian Academy of Sciences, 117997 Kosygin st. 4, Moscow, Russia
  
• 11³⁰-11⁴⁵ Cofee Break.
• 11⁴⁵-12³⁰ Yousuke Ohno "MDGRAPE-3 System. A PFLOPS Special-Purpose Computer System for Molecular Dynamics Simulations "
  High-performance Molecular Simulation Team, Computational & Experimental Systems Biology Group, Genomic Sciences Center, The Institute of Physical and Chemical Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama City, Kanagawa, 230-0045, Japan
• 12³⁰-13¹⁵ Konstantin Shaitan "Molecular dynamics of DNA, binding actinomycin D"
  M. V. Lomonosov Moscow State University, 119899 Khokhlov st. 1-12, Moscow, Russia
• 13¹⁵-14⁴⁵ Lunch.
• 14⁴⁵-15³⁰ Toshiki Mima"Molecular Dynamics Simulation on Confined Liquid Crystals"
  Yasuoka Laboratory, Keio University Hiyoshi 3-14-1, Kohoku-ku, Yokohama 223-8522, Japan
• 15³⁰-16¹⁵ Ekaterina Miroshnichenko"Molecular Dynamics Simulation of RNA I-Motif"
  Institute of Radiophysics and Electronics, NAS, 61085 Proskura st. 12, Kharkov, Ukraine
• 16¹⁵-16³⁰ Cofee Break.
• 16³⁰-17¹⁵ Robert Selwyne "Homology Modeling and Molecular Dynamics of Cyclin-Dependent Proteinkinases: yCDC28 and hCDK2"
  Department of Botany, Bharahthiar University, Coimbatore-641046, TamilNadu, India
• 17¹⁵-18⁰⁰ Aram Shahinyan "Simulation of Erythrocyte Membrane. Molecular Dynamics Study"
  Institute of Applied Problems of Physics, National Academy of Sciences, 375014, H. Nersisyan str. 25, Yerevan, Armenia
• 18⁰⁰-18⁴⁵ Mikhail Avdeev "Nonmonotonic Behavior of the Concentration in the Kinetics of Dissolution of Fullerenes"
  Frank Laboratory of Neutron Physics, JINR (Joint Institute for Nuclear Research), 141980 Dubna, Moscow~region, Russia
• 19⁰⁰ Welcome Party.

September 20

• 9¹⁵-10⁰⁰ Masatoshi Furuya "Variation for Microscopic Structure of Ethanol/Cyclohexane Binary Liquid With Mole Fraction and Molecular Description of Self-Diffusion Coefficient of Ethanol"
  Yasuoka Laboratory, Department of Mechanical Engineering, Keio University 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan
• 10⁰⁰-10⁴⁵ Abdel Kenoufi "Geometry optimization of complex materials systems"
  Center for Atomic-scale Materials Physics (CAMP), Department of Physics, Technical University of Denmark, Building 307 DK 2800 Kgs. Lyngby, Denmark
• 10⁴⁵-11³⁰ Ksenia Tereshkina "Molecular Dynamics of GlyR: ion migration"
  M. V. Lomonosov Moscow State University, 119899 Khokhlov st. 1-12, Moscow, Russia
• 11³⁰-11⁴⁵ Cofee Break.
• 11⁴⁵-12³⁰ Tatyana Shchuka "Antimicrobial Peptide Magainin 2 Molecular Dynamics Simulation in Collision and Water Surroundings "
  M. V. Lomonosov Moscow State University, 119899 Khokhlov st. 1-12, Moscow, Russia
• 12³⁰-13¹⁵ Dmitry Kretov "Molecular Dynamics Simulation of Substitution of Conservative Glycine by Serine In a G-loop of Mutant cdc28-srm of Yeast Using Crystal Lattice of Human Kinase CDK2"
  Sector for Molecular Modeling, Laboratory of Radiation Biology, Joint Institute for Nuclear Research, 141980 Dubna, Moscow Region, Russia
• 13¹⁵-14⁴⁵ Lunch.
• 14⁴⁵-15³⁰ Vladimir Monastirny "MD Simulations of RecA Protein: The Influence of Amino Acid (Mutant) Exchanges In Beta-Sheet Loops and DNA Inhibition Sites"
  Sector for Molecular Modeling, Laboratory of Radiation Biology, Joint Institute for Nuclear Research, 141980 Dubna, Moscow Region, Russia
• 15³⁰-16¹⁵ Mikhail Altaisky "On the activation function of bipolar cells: a quantum mechanical model"
  Sector for Molecular Modeling, Laboratory of Radiation Biology, Joint Institute for Nuclear Research, 141980 Dubna, Moscow Region, Russia
• 16¹⁵-17⁰⁰ Yegor Tourleigh "Nonequlibrium study of nanotube-peptide complexes in their interaction with membranes"
  M. V. Lomonosov Moscow State University, 119899 Khokhlov st. 1-12, Moscow, Russia
• 17⁰⁰-17⁴⁵ Kholmirzo Kholmurodov "Computer Molecular Simulations of Protein Structures (Cyclin-Dependent Kinases and Visual Pigment Rhodopsin)"
  Sector for Molecular Modeling, Laboratory of Radiation Biology, Joint Institute for Nuclear Research, 141980 Dubna, Moscow Region, Russia
• 17⁴⁵-18⁰⁰ Closing, Round table, Coffee
• 18⁰⁰ Excursion to JINR